bbtools software package (Illumina Inc)

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Illumina Inc bbtools software package
Bbtools Software Package, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbtools+software+package/bbtools+software+package/pmc10756260__pnas__2306160120__sapp-36-6-0
Average 90 stars, based on 1 article reviews

bbtools software package - by Bioz Stars, 2026-09

90/100 stars

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Article Title: Specific and Intraspecific Diversity of Symphypleona and Neelipleona (Hexapoda: Collembola) in Southern High Appalachia (USA)
Article Snippet: Illumina reads were processed with bbtools software package (https://jgi.doe.gov/data-and-tools/bbtools/; v38.87 [45]; accessed on 10 February 2022) to merge paired read ends, remove PhiX reads, trim Illumina adapters, filter reads for the correct size, remove reads with quality score < 30, cluster Diversity 2022, 14, 847 5 of 19 sequences by similarity allowing 5 mismatches (~1%) and generate a final matrix in FASTA format.

Article Title: Shedding light on dark taxa in sky‐island Appalachian leaf litter: Assessing patterns of endemicity using large‐scale, voucher‐based barcoding
Article Snippet: Illumina reads were processed with bbtools software package (https:// jgi.doe.gov/data-and-tools/bbtools/; v38.87 Bushnell et al., 2017) to merge paired read ends, remove PhiX reads, trim Illumina adapters, filter reads for the correct size, remove reads with quality score <30, cluster sequences by similarity allowing five mismatches ( 1%) and generate a final matrix in FASTA format.

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Article Snippet: Illumina only assemblies were also conducted. .. Illumina reads were processed using the BBtools software package, in which they were merged, error corrected and normalized, and used as input for MIRA 4.9.5, and SPAdes 3.7.1. .. Raw Illumina reads were used as input for metaSPAdes (8), or as input for MIRA 4.9.5 and SPAdes 3.7.1, where the assemblers used their native software to error-correct and join reads.

Article Title: Uncovering novel functions of the enigmatic, abundant, and active Anaerolineae in a salt marsh ecosystem
Article Snippet: Sequencing was carried out on the eight samples described above, using the Illumina NovaSeq Regular 270-bp fragment mode. .. The BBTools software package, specifically BBDUk and BBMap, was used to trim and screen paired-end Illumina reads (BBTools software package, http://bbtools.jgi.doe.gov ). ..

Article Title: Uncovering novel functions of the enigmatic, abundant, and active Anaerolineae in a salt marsh ecosystem.
Article Snippet: Sequencing was carried out on the eight samples described above, using the Illumina NovaSeq Regular 270-bp fragment mode. .. The BBTools software package, specifically BBDUk and BBMap, was used to trim and screen paired-end Illumina reads (BBTools software package, http://bbtools.jgi.doe.gov). ..

Article Title: First report of the Euconnus Thomson subgenus Cladoconnus Reitter in the New World, represented by thirteen new Appalachian species ( Coleoptera , Staphylinidae , Scydmaeninae )
Article Snippet: Nanopore libraries were prepared using the ligation sequencing kit LSK-112 (Oxford Nanopore Technologies, Oxford, UK) and sequenced using a v10.4 flowcell. .. Illumina reads were processed with bbtools software package ( https://jgi.doe.gov/data-and-tools/bbtools/ ; v38.87, ) to merge paired read ends, remove PhiX reads, trim Illumina adapters, filter reads for the correct size, remove reads with quality score<30, cluster sequences by similarity allowing 5 mismatches (~1%), and generate a final matrix in FASTA format. ..

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